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Agents (and any future inventory tool) doing a naive recursive read of a project pick up node_modules, __pycache__, build output, and token artifacts even when those are gitignored, because a recursive read sees the disk, not git. I added a gitignore-syntax .aiignore at the repo root with the default skip list, and a protocols.org "Recursive Reads" subsection documenting the convention, the defaults to assume absent a file, and the lockfile policy (skip on agent reads, independent of git-tracking).
I did not wire the walking scripts (audit.sh, diff-lang.sh, sync-language-bundle.sh): they do targeted finds over .ai/.claude/bundle dirs, never whole-tree walks, so honoring .aiignore there would be dead code. That belongs in a future catalog tool.
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Handoffs that arrive mid-session used to sit unseen until the next startup or a manual check. Today's burst of cross-project handoffs made that gap obvious. I added monitor-inbox.org, the cadence-and-decision layer over process-inbox: check the inbox at every task boundary, decide act-now (just do it) versus file (ask, with filing as option 1), and reply to the sender. An opt-in background-monitor /loop recipe covers unattended watching.
inbox-status (with bats tests) is the cheap check the cadence calls. It lists unprocessed handoffs and exits nonzero when any are pending, using the same artifact exclusions as the wrap-up sanity check. protocols.org gets a short cadence note so the habit fires every session, and INDEX.org lists the new workflow. The act-vs-file rule (act-now is silent, filing asks with file as option 1, ambiguity asks) is the decision protocol we settled today.
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An org-drill session asked to send a follow-up email first claimed it couldn't, then hand-built MIME through msmtp, because nothing told it cmail send exists. I added a "Sending Email" subsection to protocols.org (read every session): cmail (c@cjennings.net) is the default for personal mail, dmail for work, and cmail-action send is the tool, with one-liner examples for body-file, attachments, Cc/Bcc, and threaded replies. I also rewrote send-email.org Step 4, replacing the inline-Python heredoc that taught the hard way with the cmail-action send call.
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A single .ai/session-context.org races when two agents share a project: each agent's writes clobber the other's session log. I added .ai/scripts/session-context-path, which resolves the active path from AI_AGENT_ID: unset gives the legacy .ai/session-context.org singleton (so every existing one-agent session is unchanged), set gives .ai/session-context.d/<id>.org with the id sanitized to filename-safe characters. This is Codex's Phase 1 slice from the runtime-neutral spec: the race fix on its own, no broader refactor.
startup.org's existence check and wrap-it-up.org's rename now resolve through the helper, each with a singleton fallback so older checkouts that haven't synced the script still work. Wrap folds the agent id into the archive name so two agents wrapping in the same minute don't collide. protocols.org documents the rule. Verified with 5 bats cases and a two-agent simulation showing distinct paths per id.
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credential
A session false-alarmed on a leak risk when restoring a credentials doc into a tracked .ai/ file. The reasoning was wrong: a tracked secret is only a public-leak risk where the repo can reach a public remote, which means code projects on public GitHub, the ones that already gitignore .ai/. Personal and documentation projects push to a private single-user repo on cjennings.net, so tracked credentials in their .ai/ files are fine and expected.
I added the rule next to the existing "should .ai/ be committed?" decision in protocols.org, since it's a direct corollary of the same code-vs-personal split. The "is this a leak?" question now resolves on which kind of project and remote it is, not on the mere presence of a credential in a tracked file.
Origin: an elibrary session raised the false alarm and Craig corrected it.
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A project script dropped into .ai/scripts/ gets wiped on the next startup, because that dir syncs from the template with rsync --delete. There was no documented home for a project's own scripts, the script-side counterpart to .ai/project-workflows/.
I added .ai/project-scripts/ to the Directory Architecture table and noted in startup.org that it sits outside the synced set, like project-workflows/. A script a workflow imports lives there. Naming: a Python module imported via sys.path needs an importable name (underscores), while a CLI-invoked script can stay kebab-case like the template tooling.
No mechanism change. Startup Phase A only rsyncs protocols.org, workflows/, and scripts/, so project-scripts/ is already sync-safe. This just documents it.
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I default page notifications to --persist so a page that fires while I'm away from the desk waits for me instead of auto-dismissing after a few seconds.
page-me and status-check already persisted every page. I added --persist to the rest: the alarm, reminder, and meeting-alert examples in protocols.org, the long-running-process completion ping, and the cross-agent-watch message notification. I documented --persist as the default for any page meant to get attention, with a low-value informational ping as the only exception.
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The startup rsync propagated the Working-Files Convention section from canonical claude-templates/.ai/protocols.org into the in-repo mirror. Mechanical catch-up, no content authored here.
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The "If this session crashed right now..." heuristic was the trigger. It pushes the decision onto the agent every turn, and the agent's bias is to defer when no obvious milestone just happened. Four recent sessions in the work project showed the same drift. The pattern: substantive work, no mid-session writes, a wrap-time reconstruction afterward.
The new primary trigger is mechanical. A turn that called any state-modifying tool (Edit, Write, Agent dispatch, MCP write, or Bash that mutates state) writes to the Session Log before the closing user-facing message. Pure-read turns (Read, Glob, Grep, read-only Bash) don't trigger. The existing high-loss bullets stay as elaboration. They aren't the trigger.
The 5-turn safety net remains. The judgment heuristic is gone. The primary trigger replaces it.
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The 2026-05-15 claude-templates fold wired the rulesets-first-then-project ordering into startup.org Phase A.0, but the rule itself never landed in protocols.org. This adds a Startup Pull Ordering subsection under IMPORTANT - MUST DO with the ordering, the ff-only guardrail, and the no-auto-stash / merge / rebase rule. Mechanics stay in startup.org; the rule lives in protocols.org because it governs the first action of every session.
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Canonical .ai/ source moved from ~/projects/claude-templates/ to ~/code/rulesets/claude-templates/ via subtree merge. Phase A.0's "Refresh claude-templates" step is now "Refresh rulesets" since there's only one repo to pull.
Updates:
- startup.org Phase A.0: rsync sources point at the in-repo path
- protocols.org and cross-agent-comms.org: workflow-promotion target paths updated
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Cross-Project Boundary tells the session to stop and ask before acting on a file or task scoped to a different project's .ai/, then write a handoff file at the target project's inbox/ if confirmed.
Signature Image documents the location of the transparent signature PNGs in the archsetup stow tree and limits stamping to explicit per-document requests — never signing on initiative.
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I added a "Shell aliases (=ls= → =exa=)" note to protocols.org so future sessions know to use \ls when capturing ls output programmatically. exa prints nothing to non-TTY pipes, so the symptom looks like an empty directory. I hit this earlier in the session when a sweep came back blank for a directory I knew was populated.
I also fixed three stale ~/projects/career/ examples in cross-agent-comms/ docs that didn't get updated when career was renamed to work, and the daily-prep.org path leak from last session (~/code/deepsat/... → ~/projects/work/deepsat/code/...). The authoritative edits live in claude-templates. These rulesets snapshots landed via the standard rsync from upstream.
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Replace the seed notes.org with project-specific context (layout, install modes, task tracker location, recent inflection point). Bring in the synced template surfaces (protocols, workflows, scripts, references, retrospectives, someday-maybe) as tracked content for this content/documentation project.
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