refactor: drop in-repo dotfiles/, move stow tooling to the dotfiles repo

Since the installer clones DOTFILES_REPO into ~/.dotfiles and stows from there, the in-repo dotfiles/ tree was dead weight. Nothing reads it at install time. I removed it (831 files) now that both machines are migrated.

The Makefile's stow / restow / reset / unstow / import targets and the dotfile-script unit suites moved to the dotfiles repo. They sit alongside the scripts they manage and run standalone (cd ~/.dotfiles && make ...). This Makefile keeps the VM-integration targets and the installer-helper suite (safe-rm-rf).

I updated CLAUDE.md and README.md so stow operations run from ~/.dotfiles, and the dotfile-management, theme, and unit-test sections point at the standalone repo. The README was already describing the old in-repo model from before the installer switched to cloning. This brings it in line.

14 files changed, 0 insertions, 1455 deletions

diff --git a/dotfiles/common/.config/calibre/plugins/Apple Books covers.zip b/dotfiles/common/.config/calibre/plugins/Apple Books covers.zip
deleted file mode 100644
index 722e2c7..0000000
--- a/dotfiles/common/.config/calibre/plugins/Apple Books covers.zip
+++ /dev/null
diff --git a/dotfiles/common/.config/calibre/plugins/Comments Cleaner.zip b/dotfiles/common/.config/calibre/plugins/Comments Cleaner.zip
deleted file mode 100644
index 5a9b03c..0000000
--- a/dotfiles/common/.config/calibre/plugins/Comments Cleaner.zip
+++ /dev/null
diff --git a/dotfiles/common/.config/calibre/plugins/Extract ISBN.json b/dotfiles/common/.config/calibre/plugins/Extract ISBN.json
deleted file mode 100644
index 29e3135..0000000
--- a/dotfiles/common/.config/calibre/plugins/Extract ISBN.json
+++ /dev/null
@@ -1,14 +0,0 @@
-{
-  "Options": {
-    "askForConfirmation": true,
-    "batchSize": 100,
-    "displayFailures": true,
-    "postTask": "none",
-    "validISBN13Prefix": [
-      "977",
-      "978",
-      "979"
-    ],
-    "workerThreshold": 1
-  }
-}
\ No newline at end of file
diff --git a/dotfiles/common/.config/calibre/plugins/Extract ISBN.zip b/dotfiles/common/.config/calibre/plugins/Extract ISBN.zip
deleted file mode 100644
index aa3628c..0000000
--- a/dotfiles/common/.config/calibre/plugins/Extract ISBN.zip
+++ /dev/null
diff --git a/dotfiles/common/.config/calibre/plugins/Favourites Menu.json b/dotfiles/common/.config/calibre/plugins/Favourites Menu.json
deleted file mode 100644
index 27e1779..0000000
--- a/dotfiles/common/.config/calibre/plugins/Favourites Menu.json
+++ /dev/null
@@ -1,140 +0,0 @@
-{
-  "menus": [
-    {
-      "display": "Start Content server",
-      "path": [
-        "Connect Share",
-        "Start Content server"
-      ]
-    },
-    {
-      "display": "Extract ISBN",
-      "path": [
-        "Extract ISBN"
-      ]
-    },
-    null,
-    {
-      "display": "Add to default list",
-      "path": [
-        "Reading List",
-        "Add to default list"
-      ]
-    },
-    {
-      "display": "Remove from default list",
-      "path": [
-        "Reading List",
-        "Remove from default list"
-      ]
-    },
-    {
-      "display": "View default list",
-      "path": [
-        "Reading List",
-        "View default list"
-      ]
-    },
-    {
-      "display": "Edit default list",
-      "path": [
-        "Reading List",
-        "Edit default list"
-      ]
-    },
-    null,
-    {
-      "display": "Find book duplicates...",
-      "path": [
-        "Find Duplicates",
-        "Find book duplicates..."
-      ]
-    },
-    {
-      "display": "Clean comments",
-      "path": [
-        "Clean Comments",
-        "Clean comments"
-      ]
-    },
-    {
-      "display": "Check library",
-      "path": [
-        "Choose Library",
-        "Library maintenance",
-        "Check library"
-      ]
-    },
-    {
-      "display": "Plugin updater",
-      "path": [
-        "Plugin Updater"
-      ]
-    },
-    null,
-    {
-      "display": "Email to...",
-      "path": [
-        "Connect Share",
-        "Email to..."
-      ]
-    },
-    {
-      "display": "email to Christine's Kindle",
-      "path": [
-        "Connect Share",
-        "Email to...",
-        "Christine's Kindle"
-      ]
-    },
-    {
-      "display": "email to Craig's Paperwhite",
-      "path": [
-        "Connect Share",
-        "Email to...",
-        "Paperwhite"
-      ]
-    },
-    {
-      "display": "email to Craig's Pixel6",
-      "path": [
-        "Connect Share",
-        "Email to...",
-        "Pixel6"
-      ]
-    },
-    null,
-    {
-      "display": "Start wireless device connection",
-      "path": [
-        "Connect Share",
-        "Start wireless device connection"
-      ]
-    },
-    {
-      "display": "Stop wireless device connection [192.168.86.26 or 172.17.0.1, port 9090]",
-      "path": [
-        "Connect Share",
-        "Stop wireless device connection [192.168.86.26 or 172.17.0.1, port 9090]"
-      ]
-    },
-    {
-      "display": "Manage collections",
-      "path": [
-        "Edit Collections"
-      ]
-    },
-    {
-      "display": "Get books",
-      "path": [
-        "Store"
-      ]
-    },
-    {
-      "display": "Kindle Collections",
-      "path": [
-        "Kindle Collections"
-      ]
-    }
-  ]
-}
\ No newline at end of file
diff --git a/dotfiles/common/.config/calibre/plugins/Favourites Menu.zip b/dotfiles/common/.config/calibre/plugins/Favourites Menu.zip
deleted file mode 100644
index 569574c..0000000
--- a/dotfiles/common/.config/calibre/plugins/Favourites Menu.zip
+++ /dev/null
diff --git a/dotfiles/common/.config/calibre/plugins/Find Duplicates.json b/dotfiles/common/.config/calibre/plugins/Find Duplicates.json
deleted file mode 100644
index 9daa2b7..0000000
--- a/dotfiles/common/.config/calibre/plugins/Find Duplicates.json
+++ /dev/null
@@ -1,13 +0,0 @@
-{
-  "authorMatch": "identical",
-  "authorSoundexLength": 8,
-  "autoDeleteBinaryDups": false,
-  "identifierType": "isbn",
-  "includeLanguages": false,
-  "searchType": "binary",
-  "showAllGroups": true,
-  "showTagAuthor": true,
-  "sortGroupsByTitle": true,
-  "titleMatch": "identical",
-  "titleSoundexLength": 6
-}
\ No newline at end of file
diff --git a/dotfiles/common/.config/calibre/plugins/Find Duplicates.zip b/dotfiles/common/.config/calibre/plugins/Find Duplicates.zip
deleted file mode 100644
index 73112d9..0000000
--- a/dotfiles/common/.config/calibre/plugins/Find Duplicates.zip
+++ /dev/null
diff --git a/dotfiles/common/.config/calibre/plugins/Kindle hi-res covers.zip b/dotfiles/common/.config/calibre/plugins/Kindle hi-res covers.zip
deleted file mode 100644
index 40106fe..0000000
--- a/dotfiles/common/.config/calibre/plugins/Kindle hi-res covers.zip
+++ /dev/null
diff --git a/dotfiles/common/.config/calibre/plugins/Kobo Utilities.json b/dotfiles/common/.config/calibre/plugins/Kobo Utilities.json
deleted file mode 100644
index 4d9121a..0000000
--- a/dotfiles/common/.config/calibre/plugins/Kobo Utilities.json
+++ /dev/null
@@ -1,122 +0,0 @@
-{
-  "BookmarkOptions": {
-    "backgroundJob": false,
-    "clearIfUnread": false,
-    "doNotStoreIfReopened": false,
-    "rating": true,
-    "readingStatus": true,
-    "setDateToNow": true,
-    "storeBookmarks": true,
-    "storeIfMoreRecent": false
-  },
-  "Devices": {
-    "N4181C1037466": {
-      "active": true,
-      "backupOptionsStore": {
-        "backupCopiesToKeepSpin": 10,
-        "backupDestDirectory": "/home/cjennings/documents/kobo",
-        "backupEachCOnnection": true,
-        "backupZipDatabase": true,
-        "doDailyBackp": false
-      },
-      "location_code": "main",
-      "name": "Kobo Libra 2",
-      "serial_no": "N4181C1037466",
-      "type": "Kobo Libra 2",
-      "updateOptionsStore": {
-        "doEarlyFirmwareUpdate": false,
-        "doFirmwareUpdateCheck": true,
-        "firmwareUpdateCheckLastTime": 0
-      },
-      "uuid": "8de75c8a-f9b6-405c-86a3-515afd1e71fa"
-    }
-  },
-  "MetadataOptions": {
-    "author": false,
-    "authourSort": false,
-    "description": false,
-    "descriptionTemplate": "",
-    "descriptionUseTemplate": false,
-    "isbn": false,
-    "language": false,
-    "published_date": false,
-    "publisher": false,
-    "rating": false,
-    "readingStatus": -1,
-    "reading_direction": "Default",
-    "resetPosition": false,
-    "series": false,
-    "setRreadingStatus": false,
-    "set_reading_direction": false,
-    "set_sync_date": false,
-    "subtitle": false,
-    "subtitleTemplate": "",
-    "sync_date_library_date": "timestamp",
-    "title": false,
-    "titleSort": false,
-    "update_KoboEpubs": false,
-    "usePlugboard": false
-  },
-  "ReadingOptions": {
-    "doNotUpdateIfSet": false,
-    "lockMargins": false,
-    "readingAlignment": "Off",
-    "readingFontFamily": "Georgia",
-    "readingFontSize": 22,
-    "readingLeftMargin": 3,
-    "readingLineHeight": 1.3,
-    "readingRightMargin": 3,
-    "updateConfigFile": false
-  },
-  "_version": 2,
-  "backupAnnotations": {
-    "dest_directory": ""
-  },
-  "backupOptionsStore": {
-    "backupCopiesToKeepSpin": 5,
-    "backupDestDirectory": "",
-    "backupEachCOnnection": false,
-    "backupZipDatabase": true,
-    "doDailyBackp": false
-  },
-  "cleanImagesDir": {
-    "delete_extra_covers": false
-  },
-  "commonOptionsStore": {
-    "buttonActionDevice": "",
-    "buttonActionLibrary": "",
-    "individualDeviceOptions": true
-  },
-  "coverUpload": {
-    "blackandwhite": false,
-    "dithered_covers": false,
-    "keep_cover_aspect": false,
-    "kepub_covers": false,
-    "letterbox": false,
-    "letterbox_color": "#000000",
-    "png_covers": false
-  },
-  "fixDuplicatesOptionsStore": {
-    "keepNewestShelf": true,
-    "purgeShelves": false
-  },
-  "getShelvesOptionStore": {
-    "allBooks": true,
-    "replaceShelves": true
-  },
-  "removeAnnotations": {
-    "removeAnnotAction": 0
-  },
-  "removeCovers": {
-    "kepub_covers": false,
-    "remove_fullsize_covers": false
-  },
-  "setRelatedBooksOptionsStore": {
-    "relatedBooksType": 0
-  },
-  "updateOptionsStore": {
-    "doEarlyFirmwareUpdate": false,
-    "doFirmwareUpdateCheck": false,
-    "firmwareUpdateCheckLastTime": 1656213583
-  }
-}
\ No newline at end of file
diff --git a/dotfiles/common/.config/calibre/plugins/Open With.json b/dotfiles/common/.config/calibre/plugins/Open With.json
deleted file mode 100644
index 81eaeb8..0000000
--- a/dotfiles/common/.config/calibre/plugins/Open With.json
+++ /dev/null
@@ -1,61 +0,0 @@
-{
-  "OpenWithMenus": {
-    "Menus": [
-      {
-        "active": false,
-        "appArgs": "",
-        "appPath": "firefox",
-        "format": "EPUB",
-        "image": "owp_firefox.png",
-        "menuText": "EPUBReader (EPUB)",
-        "subMenu": ""
-      },
-      {
-        "active": false,
-        "appArgs": "-c",
-        "appPath": "/usr/bin/emacsclient",
-        "format": "PDF",
-        "image": "reader.png",
-        "menuText": "Emacsclient",
-        "subMenu": ""
-      },
-      {
-        "active": true,
-        "appArgs": "",
-        "appPath": "/usr/bin/zathura",
-        "format": "EPUB",
-        "image": "edit_book.png",
-        "menuText": "Zathura (EPUB)",
-        "subMenu": ""
-      },
-      {
-        "active": true,
-        "appArgs": "",
-        "appPath": "/usr/bin/zathura",
-        "format": "PDF",
-        "image": "PDF.png",
-        "menuText": "Zathura (PDF)",
-        "subMenu": ""
-      },
-      {
-        "active": false,
-        "appArgs": "-c",
-        "appPath": "/usr/bin/emacsclient",
-        "format": "EPUB",
-        "image": "PDF.png",
-        "menuText": "Emacsclient",
-        "subMenu": ""
-      },
-      {
-        "active": false,
-        "appArgs": "",
-        "appPath": "gimp",
-        "format": "COVER",
-        "image": "owp_gimp.png",
-        "menuText": "Gimp (Cover)",
-        "subMenu": ""
-      }
-    ],
-    "UrlColWidth": 202
-  }
-}
\ No newline at end of file
diff --git a/dotfiles/common/.config/calibre/plugins/Reading List.json b/dotfiles/common/.config/calibre/plugins/Reading List.json
deleted file mode 100644
index a348407..0000000
--- a/dotfiles/common/.config/calibre/plugins/Reading List.json
+++ /dev/null
@@ -1,8 +0,0 @@
-{
-  "Devices": {},
-  "Options": {
-    "quickAccess": false,
-    "removeDialog": true
-  },
-  "SchemaVersion": 1.65
-}
\ No newline at end of file
diff --git a/dotfiles/common/.config/calibre/plugins/Reading List.zip b/dotfiles/common/.config/calibre/plugins/Reading List.zip
deleted file mode 100644
index 8592b6c..0000000
--- a/dotfiles/common/.config/calibre/plugins/Reading List.zip
+++ /dev/null
diff --git a/dotfiles/common/.config/calibre/plugins/Search The Internet.json b/dotfiles/common/.config/calibre/plugins/Search The Internet.json
deleted file mode 100644
index 21f6786..0000000
--- a/dotfiles/common/.config/calibre/plugins/Search The Internet.json
+++ /dev/null
@@ -1,1097 +0,0 @@
-{
-  "SearchMenus": {
-    "Menus": [
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_audible.png",
-        "menuText": "Audible for Author",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.audible.com/search?keywords={author}"
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_audible.png",
-        "menuText": "Audible for Book",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.audible.com/search?keywords={author}+{title}"
-      },
-      {
-        "active": false,
-        "encoding": "",
-        "image": "",
-        "menuText": "",
-        "method": "",
-        "openGroup": false,
-        "subMenu": "",
-        "url": ""
-      },
-      {
-        "active": true,
-        "encoding": "latin-1",
-        "image": "stip_amazon.png",
-        "menuText": "Amazon.com for Book",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.amazon.com/s/ref=nb_sb_noss?url=search-alias%3Dstripbooks&field-keywords={author}+{title}"
-      },
-      {
-        "active": false,
-        "encoding": "latin-1",
-        "image": "stip_amazon.png",
-        "menuText": "Amazon.co.uk for Book",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.amazon.co.uk/s/ref=nb_sb_noss?url=search-alias%3Dstripbooks&field-keywords={author}+{title}"
-      },
-      {
-        "active": false,
-        "encoding": "latin-1",
-        "image": "stip_amazon.png",
-        "menuText": "Amazon.com.au for Book",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.amazon.com.au/s/ref=nb_sb_noss?url=search-alias%3Dstripbooks&field-keywords={author}+{title}"
-      },
-      {
-        "active": false,
-        "encoding": "",
-        "image": "",
-        "menuText": "",
-        "method": "",
-        "openGroup": false,
-        "subMenu": "",
-        "url": ""
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_bn.png",
-        "menuText": "Barnes and Noble for Author",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.barnesandnoble.com/s/{author}/_/M-8q8"
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_bn.png",
-        "menuText": "Barnes and Noble for Book",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.barnesandnoble.com/s/{author}+{title}/_/M-8q8"
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_bn.png",
-        "menuText": "Barnes and Noble for ISBN",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.barnesandnoble.com/s/{isbn}/_/M-8q8"
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_bn.png",
-        "menuText": "Barnes and Noble for Title",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.barnesandnoble.com/s/{title}/_/M-8q8"
-      },
-      {
-        "active": false,
-        "encoding": "",
-        "image": "",
-        "menuText": "",
-        "method": "",
-        "openGroup": false,
-        "subMenu": "",
-        "url": ""
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_ebay.png",
-        "menuText": "EBay US",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.ebay.com/sch/i.html?_nkw={author}+{title}&_sacat=267"
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_ebay.png",
-        "menuText": "EBay UK",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.ebay.co.uk/sch/i.html?_nkw={author}+{title}&_sacat=267"
-      },
-      {
-        "active": false,
-        "encoding": "",
-        "image": "",
-        "menuText": "",
-        "method": "",
-        "openGroup": false,
-        "subMenu": "",
-        "url": ""
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_ebooks.png",
-        "menuText": "EBooks for Author",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.ebooks.com/SearchApp/SearchResults.net?term={author}&RestrictBy=author"
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_ebooks.png",
-        "menuText": "EBooks for Book",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.ebooks.com/SearchApp/SearchResults.net?term={author}+{title}"
-      },
-      {
-        "active": true,
-        "encoding": "",
-        "image": "",
-        "menuText": "",
-        "method": "",
-        "openGroup": false,
-        "subMenu": "",
-        "url": ""
-      },
-      {
-        "active": true,
-        "encoding": "utf-8",
-        "image": "stip_ff.png",
-        "menuText": "FantasticFiction for Author",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.fantasticfiction.com/search/?searchfor=author&keywords={author}"
-      },
-      {
-        "active": true,
-        "encoding": "utf-8",
-        "image": "stip_ff.png",
-        "menuText": "FantasticFiction for Title",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.fantasticfiction.com/search/?searchfor=book&keywords={title}"
-      },
-      {
-        "active": false,
-        "encoding": "",
-        "image": "",
-        "menuText": "",
-        "method": "",
-        "openGroup": false,
-        "subMenu": "",
-        "url": ""
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_fictiondb.png",
-        "menuText": "FictionDB for Author",
-        "method": "POST",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.fictiondb.com/search/searchresults.htm?styp=5&srchtxt={author}"
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_fictiondb.png",
-        "menuText": "FictionDB for Book",
-        "method": "POST",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.fictiondb.com/search/searchresults.htm?styp=5&author={author}&title={title}&srchtxt=multi&sgcode=0&tpcode=0&imprint=0&pubgroup=0&genretype=--&rating=-&myrating=-&status=-"
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_fictiondb.png",
-        "menuText": "FictionDB for ISBN",
-        "method": "POST",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.fictiondb.com/search/searchresults.htm?styp=5&srchtxt={isbn}"
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_fictiondb.png",
-        "menuText": "FictionDB for Title",
-        "method": "POST",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.fictiondb.com/search/searchresults.htm?styp=5&srchtxt={title}"
-      },
-      {
-        "active": false,
-        "encoding": "",
-        "image": "",
-        "menuText": "",
-        "method": "",
-        "openGroup": false,
-        "subMenu": "",
-        "url": ""
-      },
-      {
-        "active": false,
-        "encoding": "utf-8",
-        "image": "stip_goodreads.png",
-        "menuText": "Goodreads for Author",
-        "method": "GET",
-        "openGroup": false,
-        "subMenu": "",
-        "url": "https://www.goodreads.com/search/search?q={author}&search_type=books"
-      },
-      {
-        "active": false,
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