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Since the installer clones DOTFILES_REPO into ~/.dotfiles and stows from there, the in-repo dotfiles/ tree was dead weight. Nothing reads it at install time. I removed it (831 files) now that both machines are migrated.
The Makefile's stow / restow / reset / unstow / import targets and the dotfile-script unit suites moved to the dotfiles repo. They sit alongside the scripts they manage and run standalone (cd ~/.dotfiles && make ...). This Makefile keeps the VM-integration targets and the installer-helper suite (safe-rm-rf).
I updated CLAUDE.md and README.md so stow operations run from ~/.dotfiles, and the dotfile-management, theme, and unit-test sections point at the standalone repo. The README was already describing the old in-repo model from before the installer switched to cloning. This brings it in line.
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I removed the `ai-assistants` tmux launcher and the `.claude/settings.local.json` permissions stub from the stowed common dotfiles. The two `aliases.sh` files (bash and zsh) each lost a matching 5-line comment block about the Claude `ai` launcher. None of these belong in a shared dotfile tree.
Two small adjacent updates landed in the same commit. The gitconfig `includeIf` path moved from `~/code/deepsat/` to `~/projects/work/deepsat/code/` to match the on-disk layout. Qalculate auto-saved its config version bump from 5.9.0 to 5.10.0.
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- archsetup: add proton-vpn-gtk-app; configure logind to ignore lid switch
- hyprland.conf: autostart protonvpn-app minimized
- waybar: set battery module to BAT1 (velox)
- pypr: resize scratchpads to fit 80x24 minimum; enlarge monitor for btop
- gitconfig: add deepsat GHE credential helpers
- CLAUDE.md: update notes.org reference (lowercase)
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Rename dotfiles/system to dotfiles/common for clarity - indicates
shared dotfiles used across all desktop environments (DWM, Hyprland).
Removed config directories for uninstalled applications:
- ghostty (using different terminal)
- lf (using ranger instead)
- mopidy (using mpd instead)
- nitrogen (X11-only, obsolete for Wayland)
- pychess (not installed)
- JetBrains (not installed via archsetup)
- youtube-dl (using yt-dlp with different config location)
Kept audacious config for potential future use.
Updated all references in archsetup, CLAUDE.md, todo.org, and
validation.sh.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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