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-rwxr-xr-xscripts/doctor.sh177
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diff --git a/scripts/doctor.sh b/scripts/doctor.sh
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+#!/usr/bin/env bash
+# doctor.sh — verify ~/.claude/ live state matches rulesets repo + settings.json.
+#
+# Read-only diagnostic. Reports drift line-by-line: ok / WARN / FAIL.
+# Exit 0 on clean, 1 if any FAIL was emitted. Warnings do not block.
+#
+# Run from the repo root via `make doctor`.
+
+set -uo pipefail
+
+REPO="$(cd "$(dirname "$0")/.." && pwd)"
+CLAUDE_DIR="$HOME/.claude"
+SETTINGS="$REPO/.claude/settings.json"
+
+ok_count=0
+warn_count=0
+fail_count=0
+
+ok() { printf ' ok %s\n' "$1"; ok_count=$((ok_count+1)); }
+warn() { printf ' WARN %s\n' "$1"; warn_count=$((warn_count+1)); }
+fail() { printf ' FAIL %s\n' "$1"; fail_count=$((fail_count+1)); }
+
+require() {
+ if ! command -v "$1" >/dev/null 2>&1; then
+ echo "ERROR: required tool '$1' not found in PATH" >&2
+ exit 2
+ fi
+}
+
+is_live_symlink() {
+ [ -L "$1" ] && [ -e "$1" ]
+}
+
+# Reports ok / dangling / missing for a single symlink.
+# Args: <label> <link-path> <severity: fail|warn> [<hint>]
+check_symlink() {
+ local label="$1" link="$2" severity="$3" hint="${4:-}"
+ local suffix=""
+ [ -n "$hint" ] && suffix=" ($hint)"
+ if is_live_symlink "$link"; then
+ ok "$label"
+ elif [ -L "$link" ]; then
+ "$severity" "$label: dangling symlink"
+ else
+ "$severity" "$label: not installed$suffix"
+ fi
+}
+
+require jq
+
+# ----- 1. Skills -----
+echo "Skills:"
+for f in "$REPO"/*/SKILL.md; do
+ name="$(basename "$(dirname "$f")")"
+ check_symlink "skill $name" "$CLAUDE_DIR/skills/$name" fail
+done
+
+# ----- 2. Rules -----
+echo
+echo "Rules:"
+for f in "$REPO"/claude-rules/*.md; do
+ name="$(basename "$f")"
+ check_symlink "rule $name" "$CLAUDE_DIR/rules/$name" fail
+done
+
+# ----- 3. Default hooks (warn-only — opt-out is legitimate) -----
+echo
+echo "Default hooks:"
+shopt -s nullglob
+for f in "$REPO"/hooks/*.sh "$REPO"/hooks/*.py; do
+ name="$(basename "$f")"
+ case "$name" in
+ destructive-bash-confirm.py) continue ;; # opt-in
+ esac
+ check_symlink "hook $name" "$CLAUDE_DIR/hooks/$name" warn "run: make install-hooks"
+done
+shopt -u nullglob
+
+# ----- 4. Claude config (settings.json, .mcp.json, commands dir) -----
+echo
+echo "Claude config:"
+shopt -s nullglob dotglob
+for f in "$REPO"/.claude/*.json; do
+ name="$(basename "$f")"
+ case "$name" in
+ settings.local.json) continue ;; # per-machine, gitignored
+ esac
+ check_symlink "config $name" "$CLAUDE_DIR/$name" fail
+done
+shopt -u nullglob dotglob
+
+check_symlink "config commands/" "$CLAUDE_DIR/commands" fail
+
+# ----- 5. Hook commands referenced by settings.json all exist -----
+echo
+echo "Hooks referenced by settings.json:"
+hook_cmds=$(jq -r '
+ [.hooks // {} | to_entries[] | .value[]?.hooks[]?.command] | unique | .[]
+' "$SETTINGS" 2>/dev/null)
+if [ -z "$hook_cmds" ]; then
+ ok "no hooks declared"
+else
+ while IFS= read -r cmd; do
+ expanded="${cmd/#\~/$HOME}"
+ if [ -e "$expanded" ]; then
+ ok "hook reference $cmd"
+ else
+ fail "hook reference $cmd: file not found at $expanded"
+ fi
+ done <<< "$hook_cmds"
+fi
+
+# ----- 6. enabledPlugins each have an install dir under ~/.claude/plugins/data/ -----
+echo
+echo "Plugins:"
+enabled_keys=$(jq -r '
+ .enabledPlugins // {} | to_entries[] | select(.value == true) | .key
+' "$SETTINGS" 2>/dev/null)
+if [ -z "$enabled_keys" ]; then
+ ok "no plugins enabled"
+else
+ while IFS= read -r key; do
+ # key shape: "<plugin>@<marketplace>" → data dir: "<plugin>-<marketplace>"
+ dir_name="${key/@/-}"
+ if [ -d "$CLAUDE_DIR/plugins/data/$dir_name" ]; then
+ ok "plugin $key"
+ else
+ fail "plugin $key: no install dir at plugins/data/$dir_name"
+ fi
+ done <<< "$enabled_keys"
+fi
+
+# ----- 7. MCP drift: servers.json keys vs ~/.claude.json mcpServers keys -----
+echo
+echo "MCP servers (user-scope):"
+SERVERS="$REPO/mcp/servers.json"
+USER_CLAUDE="$HOME/.claude.json"
+if [ ! -f "$SERVERS" ]; then
+ warn "mcp/servers.json missing — skipping drift check"
+elif [ ! -f "$USER_CLAUDE" ]; then
+ fail "~/.claude.json missing — cannot check MCP drift"
+else
+ want=$(jq -r 'keys[]' "$SERVERS" | sort)
+ have=$(jq -r '.mcpServers // {} | keys[]' "$USER_CLAUDE" | sort)
+ while IFS= read -r s; do
+ [ -z "$s" ] && continue
+ if grep -qx "$s" <<< "$have"; then
+ ok "mcp $s"
+ else
+ fail "mcp $s: declared in servers.json but not registered"
+ fi
+ done <<< "$want"
+ while IFS= read -r s; do
+ [ -z "$s" ] && continue
+ if ! grep -qx "$s" <<< "$want"; then
+ warn "mcp $s: registered but not declared in servers.json"
+ fi
+ done <<< "$have"
+fi
+
+# ----- 8. Dangling symlinks anywhere under ~/.claude/ -----
+echo
+echo "Dangling symlinks under ~/.claude/:"
+dangle=0
+while IFS= read -r link; do
+ if [ ! -e "$link" ]; then
+ fail "$link → $(readlink "$link")"
+ dangle=$((dangle+1))
+ fi
+done < <(find "$CLAUDE_DIR" -maxdepth 4 -type l 2>/dev/null)
+[ "$dangle" -eq 0 ] && ok "no dangling symlinks"
+
+# ----- summary -----
+echo
+echo "Summary: $ok_count ok, $warn_count warnings, $fail_count failures"
+[ "$fail_count" -gt 0 ] && exit 1
+exit 0